PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G090500.1
Common NamePHAVU_007G090500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 513aa    MW: 56945 Da    PI: 6.2288
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G090500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.5e-07261282223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C++Cgk F+r  nL+ H+r H
  Phvul.007G090500.1 261 FCTICGKGFKRDANLRMHMRGH 282
                         6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.25E-5258285No hitNo description
SMARTSM003550.0026260282IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03260287IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-6261311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
SMARTSM0035564309342IPR015880Zinc finger, C2H2-like
SMARTSM0035527347369IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDLEGGLCAN NCTRSSSLTS PGNGLQTNLS SDPPSFYGLE IESPFNTFNP PSPPIQSVLP  60
GQSNTDIEIP DQENCPLSDS SNTTKLQDWN PSAMLNNLCF LEEKIHQLRD LVHLIVNKKC  120
QPFGQSHELV TQEQQLVTAD LTSIIVQLIS TAGNLLPSVR HTLTNTNPLV GQMDQLHGIN  180
LPFGSEPSSG IRPQNSSGNK LFGKSTPNDR PNPCEMEQNY NMEEHEPKDE EDVDEGESLP  240
PGSYEILQLE KEEILAPHTH FCTICGKGFK RDANLRMHMR GHGDEYKTPA ALAKPHKETG  300
SEPKLIKRYS CPYAGCKRNK DHKKFLPLKT ILCVKNHYKR THCDKSYTCS RCNMKKFSVM  360
ADLKTHEKHC GKDKWLCSCG TTFSRKDKLF GHIALFQGHT PAIPLDDIKR VAEPPDPQNR  420
ECSNKVGSVN FCFGSKLSSE NGVQNMMDMK GNIDDPMNYF SSLNFEGCNF GAFNEFPQTP  480
FEDSEGSFSF LMSGSFNYAP KFGGGESSTD NL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6371720.0KP637172.1 Vigna umbellata sensitive to proton rhizotoxicity1 (STOP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143658.10.0hypothetical protein PHAVU_007G090500g
RefseqXP_007143659.10.0hypothetical protein PHAVU_007G090500g
SwissprotQ9C8N51e-175STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLV7BFN50.0V7BFN5_PHAVU; Uncharacterized protein
STRINGGLYMA10G35940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53403254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-176C2H2 family protein